Offset or not, it makes no difference. (till you calculate total universal joint operating angle)
The most important part is having the centerline of both the transmission and the pinion be parallel.
Basically you put the engine wherever you want, but be sure the trans output shaft and the pinion are parallel
This tech tip has links to manuals that will explain it all in detail.
http://www.stovebolt.com/techtips/driveline/setup/index.htmlGrigg