Bob,
I think there may be some confusion on which "seal" is being discussed here.
I think you originally referred to the seal that goes around the outer perimeter of the windshield frame that seals it to the cab opening, yes/no/maybe so (this item below)???
https://www.steelerubber.com/windshield-weatherstrip-60-0447-50The Tech Tip pictures may lead you to think what is being discussed is the gasket that surrounds the actual glass panes inside the steel frame sections, but I think it is also talking about the outer perimeter seal.
This info (below) from the tech tips (I think?) does address your question about replacing the outer seal material and should prove helpful.
"After the frames were separated, I dug out the remaining rubber on the outer frames channels. I carefully removed the glass and headed to the glass shop.
The glass shop installed and sealed the glass in the frames and joined the two pieces with new connecting bars and screws but they would not install the rubber gasket that goes around the frame. I asked for some tips and I was told to spray the rubber and frame channel with Windex and they gave me a long narrow-tipped plastic tool to use for pushing the rubber in as I go.
The rubber I bought had glued ends and that is a good feature because you can get it not glued so when you get it installed, there are no issues. I found it to be fairly easy to install it using Windex but in places the rubber was loose in the channel, which would allow water to get in the channels and it would leak. So after some thought, I'd try it with some 3M super seal weatherstrip and gasket adhesive so I removed the rubber and was starting over."
Interested to hear back on your further thoughts/questions.
Dan