If you only changed the pinion bearing you should start with the same thickness shim (s) that you removed. Install the retainer, with gasket if you have one, then install the yoke. Get your back-lash adjusted then check your gear mesh pattern. If it's not correct you'll need to remove the pinion assembly and either add or remove shims to set pinion depth, re-intall, set back-lash, check mesh pattern.....etc. Others have said that they have successfully used silicone in place of the paper gasket
Here's a link to a shop manual, check out the section 4-16, Rear Axle. Good guidance on major repair.
http://chevy.oldcarmanualproject.com/shop/1954truck/index.htmlHere's a couple files that might help?