I'm not understanding exactly which bolt you're referring to that doesn't fit. Does the hinge bolt to the door without it being bolted to the pillar?
Can you post pictures of the issue?
The hinge bodies should have the same bolt pattern and interchange without issue, but the arm may have been bent at some point to align the door.
Other than that, I've got nothing to help you. Maybe one of the guys that's messed with doors a lot can help you out.
