There is nothing in the way of the stock linkage vs the aftermarket under the floor booster/master. My truck is living proof, I did the conversion 15 years ago. 350 V-8, 3 speed OD trans, daily driver. I just did another one about 6 months ago on a 55. No problem what so ever with bleeding or any performance.
They more than likely provided mis-matched or defective parts!
Fred


1956 3100 Pickup/Red/350/3sp OD/PS/Disc Brakes
1957 Bel Air Sport Coupe/Red/355/TH350/PS/Disc Brakes
2017 Silverado LT Single Cab SB/Black/5.3/6 Speed Trans
1947 Willys CJ2A w/F-Head engine