I've got a similar problem,I'm 6'4".
This has been discussed before in another thread.
I'll be waiting 'til i've fully bled the system,and driven it before I decide whether to cut down the arm.
I've only got the brake as mine is now an auto.
My dual M/C has less travel than the original so I don't see a huge problem in cutting it down as long as the pedal doesn't bottom out on the floor.
I would cut the pad off,then remove the desired amount and make sure your welding's good!