Fellow Burb-ites,
I had the same issue with my doors but I cheated and tack welded a washer on the jamb side of the hinge at the innermost hole to pull the top over or the bottom to aline the doors.The rubber covers the hinge hole and a 1/8" really made a difference.
If all else fails get a bigger hammer! Remember measure twice-cut once or get a new blade for your sawzall.