The master cylinder is probably trashed. Changing the type of fluid without all-new parts was a mistake, as I doubt the older natural-rubber MC cups will work with the silicone-based fluid. Rebuild or replace the cylinders, or at least the master cylinder, if the others were redone rcently. Flush the system with alcohol, or pump a couple of quarts of DOT 3 fluid through the system to get rid of the DOT 5 stuff.
Jerry