Driveline and gear noises will transmit up and down the length of the truck and appear to be coming from places they aren't. Put the rear end up on some heavy duty jack stands, chock the front wheels securely, and roll under with a stethoscope or a broomstick to check out possible noise sources. 4th. gear might eliminate noises from inside the transmission, as there's no gear reduction going on other than the rear end, or it might just be speed-related.
Jerry