Your shackles and the mounting holes in the frame are fine. They are likely becoming out of wack because of the front mounts. When the front mounts are not right side to side, the shackles have no choice but to become wonky.
Re-read my early post and do what I recommended to find your problem.
Carl


1952 5-window - return to "as built" condition | 1950 3100 with a 235 and a T-5 transmission